Publications from the Department of Computer Science, Virginia Commonwealth University.

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Submissions from 2014

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A simple contact mapping algorithm for identifying potential peptide mimetics in protein–protein interaction partners, Alex Krall, Jonathan Brunn, Spandana Kankanala, and Michael H. Peters

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Bioinformatics and Biomedical Informatics, Kayvan Najarian, Rachid Deriche, Mark A. Kon, and Nina S. T. Hirata

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Impact of HbA1c Measurement on Hospital Readmission Rates: Analysis of 70,000 Clinical Database Patient Records, Beata Strack, Jonathan P. DeShazo, Chris Gennings, Juan L. Olmo, Sebastian Ventura, Krzysztof J. Cios, and John N. Clore

Submissions from 2013

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Biomedical Informatics for Computer-Aided Decision Support Systems: A Survey, Ashwin Belle, Mark A. Kon, and Kayvan Najarian

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A Hierarchical Method for Removal of Baseline Drift from Biomedical Signals: Application in ECG Analysis, Yurong Luo, Rosalyn H. Hargraves, Ashwin Belle, Ou Bai, Xuguang Qi, Kevin R. Ward, Michael Paul Pfaffenberger, and Kayvan Najarian

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An Entropy-Based Automated Cell Nuclei Segmentation and Quantification: Application in Analysis of Wound Healing Process, Varun Oswal, Ashwin Belle, Robert Diegelmann, and Kayvan Najarian

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ENNET: inferring large gene regulatory networks from expression data using gradient boosting, Janusz Slawek and Tomasz Arodź

Submissions from 2012

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An Automated Optimal Engagement and Attention Detection System Using Electrocardiogram, Ashwin Belle, Rosalyn H. Hargraves, and Kayvan Najarian

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Non-linear dynamical signal characterization for prediction of defibrillation success through machine learning, Sharad Shandilya, Kevin R. Ward, Michael Kurz, and Kayvan Najarian

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Fracture Detection in Traumatic Pelvic CT Images, Jie Wu, Pavani Davuluri, Kevin R. Ward, Charles Cockrell, Rosalyn H. Hargraves, and Kayvan Najarian

Submissions from 2011

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A modified Stokes-Einstein equation for Aβ aggregation, Srisairam Achuthan, Bon Jae Chung, Preetam Ghosh, Vijayaraghavan Rangachari, and Ashwin Vaidya

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First-Passage Time Analysis of a One-Dimensional Diffusion-Reaction Model: Application to Protein Transport Along DNA, Michael L. Mayo, Edward J. Perkins, and Preetam Ghosh

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Fracture Detection in Traumatic Pelvic CT Images, Jie Wu, Pavani Davuluri, Kevin R. Ward, Charles Cockrell, Rosalyn Hobson, and Kayvan Najarian

Submissions from 2010

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A Signal Processing Method to Explore Similarity in Protein Flexibility, Simina Vasilache, Nazanin Mirshahi, Soo-Yeon Ji, James Mottonen, Donald J. Jacobs, and Kayvan Najarian

Submissions from 2009

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Automated ventricular systems segmentation in brain CT images by combining low-level segmentation and high-level template matching, Wenan Chen, Rebecca Smith, Soo-Yeon Ji, Kevin R. Ward, and Kayvan Najarian

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Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations, Tom M. Conrad, Andrew R. Royce, M. Kenyon Applebee, Christian L. Barrett, Bin Xie, Yuan Gao, and Bernhard Ø. Palsson

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A comparative analysis of multi-level computer-assisted decision making systems for traumatic injuries, Soo-Yeon Ji, Rebecca Smith, Toan Huynh, and Kayvan Najarian

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Brain mapping and detection of functional patterns in fMRI using wavelet transform; application in detection of dyslexia, Soo-Yeon Ji, Kevin R. Ward, and Kayvan Najarian

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A Hierarchical Method Based on Active Shape Models and Directed Hough Transform for Segmentation of Noisy Biomedical Images; Application in Segmentation of Pelvic X-ray Images, Rebecca Smith, Kayvan Najarian, and Kevin R. Ward

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Unified wavelet and gaussian filtering for segmentation of CT images; application in segmentation of bone in pelvic CT images, Simina Vasilache, Kevin R. Ward, Charles Cockrell, Jonathan Ha, and Kayvan Najarian

Submissions from 2008

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Improved machine learning method for analysis of gas phase chemistry of peptides, Allison Gehrke, Shaojun Sun, Lukasz Kurgan, Natalie Ahn, Katheryn Resing, Karen Kafadar, and Kryzysztof Cios

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SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences, Lukasz Kurgan, Kryzysztof Cios, and Ke Chen