Publications from the Department of Computer Science, Virginia Commonwealth University.

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Submissions from 2017

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SOTXTSTREAM: Density-based self-organizing clustering of text streams, Avory C. Bryant and Krzysztof J. Cios

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An Android-Based Mechanism for Energy Efficient Localization Depending on Indoor/Outdoor Context, Nicholas Capurso, Tianyi Song, Wei Cheng, Jiguo Yu, and Xiuzhen Cheng

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Mining Sequences of Developer Interactions in Visual Studio for Usage Smells, Kostadin Damevski, David C. Shepherd, Johannes Schneider, and Lori Pollock

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An integrative in-silico approach for therapeutic target identification in the human pathogen Corynebacterium diphtheriae, Syed Babar Jamal, Syed Shah Hassan, Sandeep Tiwari, Marcus V. Viana, Leandro de Jesus Benevides, Asad Ullah, Adrián G. Turjanski, Debmalya Barh, Preetam Ghosh, Daniela Arruda Costa, Artur Silva, Richard Röttger, Jan Baumbach, and Vasco A.C. Azevedo

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Ensemble learning for data stream analysis: A survey, Bartosz Krawczyk, Leandro L. Minku, João Gama, Jerzy Stefanowski, and Michał Wozniak

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fDETECT webserver: fast predictor of propensity for protein production, purification, and crystallization, Fanchi Meng, Chen Wang, and Lukasz Kurgan

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Crosstalk and the Dynamical Modularity of Feed-Forward Loops in Transcriptional Regulatory Networks, Michael A. Rowland, Ahmed Abdelzaher, Preetam Ghosh, and Michael L. Mayo

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QuaDMutEx: quadratic driver mutation explorer, Bokhari Yahya and Tomasz Jakub Arodz

Submissions from 2016

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Integration of Attributes from Non-Linear Characterization of Cardiovascular Time-Series for Prediction of Defibrillation Outcomes, Sharad Shandilya, Michael C. Kurz, Kevin R. Ward, and Kayvan Najarian

Submissions from 2015

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Transcriptional network growing models using motif-based preferential attachment, Ahmed F. Abdelzaher, Ahmad F. Al-Musawi, Preetam Ghosh, Michael L. Mayo, and Edward J. Perkins

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Identifying influential nodes in a wound healing-related network of biological processes using mean first-passage time, Tomasz Jakub Arodz and Danail Bonchev

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miRegulome: a knowledge-base of miRNA regulomics and analysis, Debmalya Barh, Bhanu Kamapantula, Neha Jain, Joseph Nalluri, Antaripa Bhattacharya, Lucky Juneja, Neha Barve, Sandeep Tiwari, Anderson Miyoshi, Vasco Azevedo, Kenneth Blum, Anil Kumar, Artur Silva, and Preetam Ghosh

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Self-Organizing Feature Maps Identify Proteins Critical to Learning in a Mouse Model of Down Syndrome, Clara Higuera, Katheleen J. Gardiner, and Kryzysztof Cios

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Self-Organizing Feature Maps Identify Proteins Critical to Learning in a Mouse Model of Down Syndrome, Clara Higuera, Katheleen J. Gardiner, and Krzysztof J. Cios

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Self-Organizing Feature Maps Identify Proteins Critical to Learning in a Mouse Model of Down Syndrome, Clara Higuera, Kathleen J. Gardiner, and Kryzysztof Cios

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Enabling smartphone-based HD video chats by cooperative transmissions in CRNs, Tao Jing, Xuewei Cui, Wei Cheng, Shixiang Zhu, Yan Huo, and Xiuzhen Cheng

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Online auction-based relay selection for cooperative communication in CR networks, Tao Jing, Fan Zhang, Wei Cheng, Yan Huo, and Xiuzhen Cheng

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Use of a Green Familiar Faces Paradigm Improves P300-Speller Brain-Computer Interface Performance, Qi Li, Shuai Lu, Jian Li, and Ou Bai

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MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes, Diego CB Mariano, Felipe L. Pereira, Preetam Ghosh, Debmalya Barh, Henrique CP Figueiredo, Artur Silva, Rommel TJ Ramos, and Vasco AC Azevedo

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DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis, Joseph J. Nalluri, Bhanu K. Kamapantula, Debmalya Barh, Neha Jain, Antaripa Bhattacharya, Sintia Silva de Almeida, Rommel Thiago Juca Ramos, Artur Silva, Vasco Azevedo, and Preetam Ghosh

Submissions from 2014

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Virtual Track: Applications and Challenges of the RFID System on Roads, Wei Cheng, Shengling Wang, and Xiuzhen Cheng

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A simple contact mapping algorithm for identifying potential peptide mimetics in protein–protein interaction partners, Alex Krall, Jonathan Brunn, Spandana Kankanala, and Michael H. Peters

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Bioinformatics and Biomedical Informatics, Kayvan Najarian, Rachid Deriche, Mark A. Kon, and Nina S. T. Hirata

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Impact of HbA1c Measurement on Hospital Readmission Rates: Analysis of 70,000 Clinical Database Patient Records, Beata Strack, Jonathan P. DeShazo, Chris Gennings, Juan L. Olmo, Sebastian Ventura, Krzysztof J. Cios, and John N. Clore

Submissions from 2013

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Biomedical Informatics for Computer-Aided Decision Support Systems: A Survey, Ashwin Belle, Mark A. Kon, and Kayvan Najarian